IL_5NDK_347

3D structure

PDB id

5NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

AGGGAACC*GGGUGCCCCGCGAGGGGAGCCCU

Length

31 nucleotides

Bulged bases

5NDK|1|13|G|1659

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDK|1|13|A|1624
5NDK|1|13|G|1625
5NDK|1|13|G|1626
5NDK|1|13|G|1627
5NDK|1|13|A|1628
5NDK|1|13|A|1629
5NDK|1|13|C|1630
5NDK|1|13|C|1631
*
5NDK|1|13|G|1646
5NDK|1|13|G|1647
5NDK|1|13|G|1648
5NDK|1|13|U|1649
5NDK|1|13|G|1650
5NDK|1|13|C|1651
5NDK|1|13|C|1652
5NDK|1|13|C|1653
5NDK|1|13|C|1654
5NDK|1|13|G|1655
5NDK|1|13|C|1656
5NDK|1|13|G|1657
5NDK|1|13|A|1658
5NDK|1|13|G|1659
5NDK|1|13|G|1660
5NDK|1|13|G|1661
5NDK|1|13|G|1662
5NDK|1|13|A|1663
5NDK|1|13|G|1664
5NDK|1|13|C|1665
5NDK|1|13|C|1666
5NDK|1|13|C|1667
5NDK|1|13|U|1668

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 2E

30S ribosomal protein S3