IL_5NDK_368

3D structure

PDB id

5NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CCCCCGC*GUGGGGG

Length

14 nucleotides

Bulged bases

5NDK|1|1H|G|2179

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDK|1|1H|C|2161
5NDK|1|1H|C|2162
5NDK|1|1H|C|2163
5NDK|1|1H|C|2164
5NDK|1|1H|C|2165
5NDK|1|1H|G|2166
5NDK|1|1H|C|2167
*
5NDK|1|1H|G|2174
5NDK|1|1H|U|2175
5NDK|1|1H|G|2176
5NDK|1|1H|G|2177
5NDK|1|1H|G|2178
5NDK|1|1H|G|2179
5NDK|1|1H|G|2180

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 2I

30S ribosomal protein S11