IL_5NDV_084

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDV_084 not in the Motif Atlas

Homologous match to IL_5TBW_088

Geometric discrepancy: 0.0822

The information below is about IL_5TBW_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

5NDV|1|1|U|2211
5NDV|1|1|C|2212
5NDV|1|1|A|2213
5NDV|1|1|A|2214
5NDV|1|1|A|2215
5NDV|1|1|G|2216
5NDV|1|1|U|2217
*
5NDV|1|1|A|2228
5NDV|1|1|A|2229
5NDV|1|1|C|2230
5NDV|1|1|C|2231
5NDV|1|1|A|2232
5NDV|1|1|A|2233
5NDV|1|1|G|2234

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain O6

60S ribosomal protein L36-A