IL_5NDV_119
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 5NDV|1|1|A|3180, 5NDV|1|1|A|3186, 5NDV|1|1|U|3207, 5NDV|1|1|A|3209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDV_119 not in the Motif Atlas
- Geometric match to IL_5TBW_124
- Geometric discrepancy: 0.0752
- The information below is about IL_5TBW_124
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5NDV|1|1|U|3179
5NDV|1|1|A|3180
5NDV|1|1|C|3181
5NDV|1|1|G|3182
5NDV|1|1|A|3183
5NDV|1|1|A|3184
5NDV|1|1|U|3185
5NDV|1|1|A|3186
5NDV|1|1|A|3187
5NDV|1|1|G|3188
*
5NDV|1|1|C|3204
5NDV|1|1|G|3205
5NDV|1|1|C|3206
5NDV|1|1|U|3207
5NDV|1|1|G|3208
5NDV|1|1|A|3209
5NDV|1|1|A|3210
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L6
- 60S ribosomal protein L6-A
- Chain L9
- 60S ribosomal protein L9-A
- Chain M4
- 60S ribosomal protein L14-A
- Chain M6
- 60S ribosomal protein L16-A
- Chain N0
- 60S ribosomal protein L20-A
- Chain O3
- 60S ribosomal protein L33-A
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