IL_5NDV_181

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

5NDV|1|2|A|1631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDV_181 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.2893

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

5NDV|1|2|U|1145
5NDV|1|2|G|1146
5NDV|1|2|A|1147
*
5NDV|1|2|U|1630
5NDV|1|2|A|1631
5NDV|1|2|C|1632
5NDV|1|2|A|1633

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D6

40S ribosomal protein S26-B

Chain S2

40S ribosomal protein S2