IL_5NDV_265
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 5NDV|1|5|G|1001
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDV_265 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.0861
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
5NDV|1|5|G|999
5NDV|1|5|C|1000
5NDV|1|5|G|1001
5NDV|1|5|A|1002
5NDV|1|5|A|1003
5NDV|1|5|U|1004
*
5NDV|1|5|A|1046
5NDV|1|5|A|1047
5NDV|1|5|A|1048
5NDV|1|5|C|1049
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain l5
- 60S ribosomal protein L5
- Chain m0
- 60S ribosomal protein L10
- Chain n1
- 60S ribosomal protein L21-A
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