IL_5NDV_269

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUG*CGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDV_269 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.2549

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5NDV|1|5|C|1069
5NDV|1|5|U|1070
5NDV|1|5|U|1071
5NDV|1|5|G|1072
*
5NDV|1|5|C|1086
5NDV|1|5|G|1087
5NDV|1|5|U|1088
5NDV|1|5|G|1089

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain n1

60S ribosomal protein L21-A

Chain n9

60S ribosomal protein L29