IL_5NDV_367
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 5NDV|1|6|U|170
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDV_367 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.1091
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
5NDV|1|6|G|143
5NDV|1|6|U|144
5NDV|1|6|A|145
5NDV|1|6|U|146
5NDV|1|6|A|147
5NDV|1|6|A|148
5NDV|1|6|C|149
*
5NDV|1|6|G|165
5NDV|1|6|C|166
5NDV|1|6|U|167
5NDV|1|6|A|168
5NDV|1|6|A|169
5NDV|1|6|U|170
5NDV|1|6|A|171
5NDV|1|6|C|172
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain d4
- 40S ribosomal protein S24-A
- Chain n4
- 60S ribosomal protein L24-A
- Chain s6
- 40S ribosomal protein S6-A
Coloring options: