IL_5NDV_395
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- 5NDV|1|6|A|793, 5NDV|1|6|U|794
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDV_395 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.4248
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5NDV|1|6|G|751
5NDV|1|6|A|752
5NDV|1|6|A|753
5NDV|1|6|A|754
5NDV|1|6|A|755
5NDV|1|6|A|756
5NDV|1|6|A|757
5NDV|1|6|U|758
5NDV|1|6|U|759
*
5NDV|1|6|A|791
5NDV|1|6|U|792
5NDV|1|6|A|793
5NDV|1|6|U|794
5NDV|1|6|U|795
5NDV|1|6|A|796
5NDV|1|6|G|797
5NDV|1|6|C|798
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c1
- 40S ribosomal protein S11-A
- Chain d2
- 40S ribosomal protein S22-A
- Chain s4
- 40S ribosomal protein S4-A
- Chain s9
- 40S ribosomal protein S9-A
Coloring options: