IL_5NDV_408
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDV_408 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.0732
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5NDV|1|6|G|1111
5NDV|1|6|G|1112
5NDV|1|6|A|1113
5NDV|1|6|G|1114
5NDV|1|6|U|1115
5NDV|1|6|A|1116
5NDV|1|6|U|1117
5NDV|1|6|G|1118
*
5NDV|1|6|U|1129
5NDV|1|6|G|1130
5NDV|1|6|A|1131
5NDV|1|6|A|1132
5NDV|1|6|A|1133
5NDV|1|6|C|1134
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain d3
- 40S ribosomal protein S23-A
- Chain q1
- 60S ribosomal protein L41-B
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