IL_5NDW_102
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UCAAG*CGACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_102 not in the Motif Atlas
- Homologous match to IL_5TBW_106
- Geometric discrepancy: 0.0852
- The information below is about IL_5TBW_106
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_65585.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
5NDW|1|1|U|2835
5NDW|1|1|C|2836
5NDW|1|1|A|2837
5NDW|1|1|A|2838
5NDW|1|1|G|2839
*
5NDW|1|1|C|2849
5NDW|1|1|G|2850
5NDW|1|1|A|2851
5NDW|1|1|C|2852
5NDW|1|1|A|2853
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain M0
- 60S ribosomal protein L10
- Chain Q0
- Ubiquitin-60S ribosomal protein L40
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