IL_5NDW_124

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDW_124 not in the Motif Atlas

Geometric match to IL_4UYK_003

Geometric discrepancy: 0.1396

The information below is about IL_4UYK_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5NDW|1|1|C|3235
5NDW|1|1|U|3236
5NDW|1|1|U|3237
5NDW|1|1|G|3238
*
5NDW|1|1|C|3249
5NDW|1|1|U|3250
5NDW|1|1|U|3251
5NDW|1|1|G|3252

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M6

60S ribosomal protein L16-A