IL_5NDW_205

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDW_205 not in the Motif Atlas

Homologous match to IL_4V88_461

Geometric discrepancy: 0.104

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

5NDW|1|2|C|1495
5NDW|1|2|U|1496
5NDW|1|2|U|1497
5NDW|1|2|G|1498
*
5NDW|1|2|C|1509
5NDW|1|2|U|1510
5NDW|1|2|U|1511
5NDW|1|2|G|1512

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C9

40S ribosomal protein S19-A