IL_5NDW_207

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5NDW|1|2|C|1637, 5NDW|1|2|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDW_207 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1154

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

5NDW|1|2|C|1636
5NDW|1|2|C|1637
5NDW|1|2|G|1638
*
5NDW|1|2|C|1764
5NDW|1|2|A|1765
5NDW|1|2|A|1766
5NDW|1|2|G|1767

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C4

40S ribosomal protein S14-B

Chain D6

40S ribosomal protein S26-B

Chain SM

Suppressor protein STM1