IL_5NDW_264

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGUAU*AAG

Length

8 nucleotides

Bulged bases

5NDW|1|5|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDW_264 not in the Motif Atlas

Homologous match to IL_5TBW_036

Geometric discrepancy: 0.2104

The information below is about IL_5TBW_036

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_42230.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5NDW|1|5|C|977
5NDW|1|5|G|978
5NDW|1|5|U|979
5NDW|1|5|A|980
5NDW|1|5|U|981
*
5NDW|1|5|A|1102
5NDW|1|5|A|1103
5NDW|1|5|G|1104

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l7

60S ribosomal protein L7-A

Chain m8

60S ribosomal protein L18-A

Chain n9

60S ribosomal protein L29