IL_5NDW_280
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 5NDW|1|5|C|1196, 5NDW|1|5|A|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_280 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.0529
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5NDW|1|5|G|1194
5NDW|1|5|A|1195
5NDW|1|5|C|1196
5NDW|1|5|A|1197
5NDW|1|5|C|1198
5NDW|1|5|C|1199
5NDW|1|5|A|1200
5NDW|1|5|C|1201
5NDW|1|5|A|1202
5NDW|1|5|A|1203
5NDW|1|5|A|1204
5NDW|1|5|A|1205
*
5NDW|1|5|U|1299
5NDW|1|5|G|1300
5NDW|1|5|A|1301
5NDW|1|5|A|1302
5NDW|1|5|A|1303
5NDW|1|5|A|1304
5NDW|1|5|U|1305
5NDW|1|5|G|1306
5NDW|1|5|G|1307
5NDW|1|5|A|1308
5NDW|1|5|U|1309
5NDW|1|5|G|1310
5NDW|1|5|G|1311
5NDW|1|5|C|1312
5NDW|1|5|G|1313
5NDW|1|5|C|1314
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain l3
- 60S ribosomal protein L3
- Chain l7
- 60S ribosomal protein L7-A
- Chain m0
- 60S ribosomal protein L10
- Chain m6
- 60S ribosomal protein L16-A
- Chain o3
- 60S ribosomal protein L33-A
- Chain q0
- Ubiquitin-60S ribosomal protein L40
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