IL_5NDW_296

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

5NDW|1|5|C|1779

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDW_296 not in the Motif Atlas

Geometric match to IL_5TBW_069

Geometric discrepancy: 0.1582

The information below is about IL_5TBW_069

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

5NDW|1|5|C|1669
5NDW|1|5|C|1670
*
5NDW|1|5|G|1778
5NDW|1|5|C|1779
5NDW|1|5|G|1780

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m9

60S ribosomal protein L19-A

Chain o4

60S ribosomal protein L34-A