IL_5NDW_309
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 5NDW|1|5|U|2159, 5NDW|1|5|U|2175, 5NDW|1|5|C|2179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_309 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.0847
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NDW|1|5|C|2156
5NDW|1|5|G|2157
5NDW|1|5|A|2158
5NDW|1|5|U|2159
5NDW|1|5|G|2160
5NDW|1|5|G|2161
*
5NDW|1|5|U|2173
5NDW|1|5|G|2174
5NDW|1|5|U|2175
5NDW|1|5|U|2176
5NDW|1|5|G|2177
5NDW|1|5|A|2178
5NDW|1|5|C|2179
5NDW|1|5|G|2180
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 6
- Small subunit ribosomal RNA; SSU rRNA
- Chain l2
- 60S ribosomal protein L2-A
- Chain q3
- 60S ribosomal protein L43-A
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