IL_5NDW_322

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAG*UC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDW_322 not in the Motif Atlas

Geometric match to IL_5J7L_269

Geometric discrepancy: 0.3379

The information below is about IL_5J7L_269

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

5NDW|1|5|G|2440
5NDW|1|5|A|2441
5NDW|1|5|G|2442
*
5NDW|1|5|U|2506
5NDW|1|5|C|2507

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain o6

60S ribosomal protein L36-A

Chain s1

40S ribosomal protein S1-A