IL_5NDW_351
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 5NDW|1|5|A|3180, 5NDW|1|5|A|3186, 5NDW|1|5|U|3207, 5NDW|1|5|A|3209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_351 not in the Motif Atlas
- Geometric match to IL_5TBW_124
- Geometric discrepancy: 0.0895
- The information below is about IL_5TBW_124
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5NDW|1|5|U|3179
5NDW|1|5|A|3180
5NDW|1|5|C|3181
5NDW|1|5|G|3182
5NDW|1|5|A|3183
5NDW|1|5|A|3184
5NDW|1|5|U|3185
5NDW|1|5|A|3186
5NDW|1|5|A|3187
5NDW|1|5|G|3188
*
5NDW|1|5|C|3204
5NDW|1|5|G|3205
5NDW|1|5|C|3206
5NDW|1|5|U|3207
5NDW|1|5|G|3208
5NDW|1|5|A|3209
5NDW|1|5|A|3210
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l6
- 60S ribosomal protein L6-A
- Chain l9
- 60S ribosomal protein L9-A
- Chain m4
- 60S ribosomal protein L14-A
- Chain m6
- 60S ribosomal protein L16-A
- Chain n0
- 60S ribosomal protein L20-A
- Chain o3
- 60S ribosomal protein L33-A
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