IL_5NDW_384
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GGG*CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 5NDW|1|6|U|380
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_384 not in the Motif Atlas
- Homologous match to IL_4V88_404
- Geometric discrepancy: 0.0725
- The information below is about IL_4V88_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_11347.3
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5NDW|1|6|G|363
5NDW|1|6|G|364
5NDW|1|6|G|365
*
5NDW|1|6|C|376
5NDW|1|6|G|377
5NDW|1|6|A|378
5NDW|1|6|U|379
5NDW|1|6|U|380
5NDW|1|6|C|381
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain d3
- 40S ribosomal protein S23-A
- Chain s4
- 40S ribosomal protein S4-A
- Chain s9
- 40S ribosomal protein S9-A
Coloring options: