IL_5NDW_434
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CUA*UGGAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_434 not in the Motif Atlas
- Homologous match to IL_4V88_458
- Geometric discrepancy: 0.1079
- The information below is about IL_4V88_458
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_58032.1
- Basepair signature
- cWW-tWH-cWW-L-L-R
- Number of instances in this motif group
- 2
Unit IDs
5NDW|1|6|C|1389
5NDW|1|6|U|1390
5NDW|1|6|A|1391
*
5NDW|1|6|U|1407
5NDW|1|6|G|1408
5NDW|1|6|G|1409
5NDW|1|6|A|1410
5NDW|1|6|A|1411
5NDW|1|6|G|1412
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c6
- 40S ribosomal protein S16-A
- Chain c7
- 40S ribosomal protein S17-A
- Chain s5
- 40S ribosomal protein S5
- Chain sR
- Guanine nucleotide-binding protein subunit beta-like protein
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