IL_5NDW_446
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UGAG*CAAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_446 not in the Motif Atlas
- Geometric match to IL_4V88_471
- Geometric discrepancy: 0.0884
- The information below is about IL_4V88_471
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
5NDW|1|6|U|1669
5NDW|1|6|G|1670
5NDW|1|6|A|1671
5NDW|1|6|G|1672
*
5NDW|1|6|C|1729
5NDW|1|6|A|1730
5NDW|1|6|A|1731
5NDW|1|6|A|1732
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain n4
- 60S ribosomal protein L24-A
- Chain s6
- 40S ribosomal protein S6-A
- Chain s8
- 40S ribosomal protein S8-A
Coloring options: