IL_5NDW_455
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 5NDW|1|7|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_455 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.0633
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5NDW|1|7|A|72
5NDW|1|7|C|73
5NDW|1|7|C|74
5NDW|1|7|G|75
5NDW|1|7|A|76
5NDW|1|7|G|77
5NDW|1|7|U|78
5NDW|1|7|A|79
5NDW|1|7|G|80
*
5NDW|1|7|C|100
5NDW|1|7|G|101
5NDW|1|7|A|102
5NDW|1|7|A|103
5NDW|1|7|A|104
5NDW|1|7|C|105
5NDW|1|7|U|106
Current chains
- Chain 7
- 5S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain l7
- 60S ribosomal protein L7-A
- Chain m0
- 60S ribosomal protein L10
- Chain n0
- 60S ribosomal protein L20-A
- Chain n1
- 60S ribosomal protein L21-A
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