IL_5NDW_475
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_475 not in the Motif Atlas
- Homologous match to IL_8P9A_305
- Geometric discrepancy: 0.069
- The information below is about IL_8P9A_305
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.1
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
5NDW|1|5|G|1898
5NDW|1|5|G|1899
5NDW|1|5|A|1900
5NDW|1|5|A|1901
5NDW|1|5|G|1902
5NDW|1|5|U|1903
5NDW|1|5|C|1904
5NDW|1|5|G|1905
5NDW|1|5|G|1906
*
5NDW|1|5|C|2333
5NDW|1|5|U|2334
5NDW|1|5|G|2335
5NDW|1|5|U|2336
5NDW|1|5|C|2337
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l3
- 60S ribosomal protein L3
- Chain n3
- 60S ribosomal protein L23-A
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