IL_5NDW_492
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- AUAAGGAUUG*CUUGAUUU
- Length
- 18 nucleotides
- Bulged bases
- 5NDW|1|2|G|1228
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_492 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.2587
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5NDW|1|2|A|1224
5NDW|1|2|U|1225
5NDW|1|2|A|1226
5NDW|1|2|A|1227
5NDW|1|2|G|1228
5NDW|1|2|G|1229
5NDW|1|2|A|1230
5NDW|1|2|U|1231
5NDW|1|2|U|1232
5NDW|1|2|G|1233
*
5NDW|1|2|C|1252
5NDW|1|2|U|1253
5NDW|1|2|U|1254
5NDW|1|2|G|1255
5NDW|1|2|A|1256
5NDW|1|2|U|1257
5NDW|1|2|U|1258
5NDW|1|2|U|1259
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C0
- 40S ribosomal protein S10-A
- Chain C2
- 40S ribosomal protein S12
- Chain D9
- 40S ribosomal protein S29-A
- Chain E1
- Ubiquitin-40S ribosomal protein S31
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