IL_5NG8_004
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- GGGGAG*CUUUGAUCC
- Length
- 15 nucleotides
- Bulged bases
- 5NG8|1|AA|U|100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NG8_004 not in the Motif Atlas
- Geometric match to IL_4LFB_031
- Geometric discrepancy: 0.2236
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
5NG8|1|AA|G|80
5NG8|1|AA|G|81
5NG8|1|AA|G|82
5NG8|1|AA|G|83
5NG8|1|AA|A|84
5NG8|1|AA|G|85
*
5NG8|1|AA|C|97
5NG8|1|AA|U|98
5NG8|1|AA|U|99
5NG8|1|AA|U|100
5NG8|1|AA|G|101
5NG8|1|AA|A|102
5NG8|1|AA|U|103
5NG8|1|AA|C|104
5NG8|1|AA|C|105
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AS
- 50S ribosomal protein L24
- Chain AW
- 50S ribosomal protein L29
Coloring options: