IL_5NG8_043

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5NG8|1|AA|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_043 not in the Motif Atlas

Geometric match to IL_7RQB_047

Geometric discrepancy: 0.0913

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

5NG8|1|AA|C|1246
5NG8|1|AA|G|1247
5NG8|1|AA|U|1248
5NG8|1|AA|U|1249
5NG8|1|AA|G|1250
5NG8|1|AA|A|1251
5NG8|1|AA|A|1252
5NG8|1|AA|G|1253
*
5NG8|1|AA|U|1272
5NG8|1|AA|G|1273
5NG8|1|AA|G|1274
5NG8|1|AA|A|1275
5NG8|1|AA|G|1276

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AO

50S ribosomal protein L20