IL_5NG8_046

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

5NG8|1|AA|G|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_046 not in the Motif Atlas

Geometric match to IL_4WF9_050

Geometric discrepancy: 0.0836

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

5NG8|1|AA|G|1356
5NG8|1|AA|G|1357
5NG8|1|AA|A|1358
5NG8|1|AA|A|1359
5NG8|1|AA|G|1360
*
5NG8|1|AA|C|1368
5NG8|1|AA|G|1369
5NG8|1|AA|C|1370

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AQ

50S ribosomal protein L22

Chain AR

50S ribosomal protein L23