IL_5NG8_062

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5NG8|1|AA|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_062 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.0989

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

5NG8|1|AA|C|1730
5NG8|1|AA|G|1731
5NG8|1|AA|U|1732
5NG8|1|AA|A|1733
5NG8|1|AA|A|1734
5NG8|1|AA|C|1735
*
5NG8|1|AA|G|1740
5NG8|1|AA|G|1741
5NG8|1|AA|A|1742
5NG8|1|AA|G|1743
5NG8|1|AA|A|1744
5NG8|1|AA|A|1745
5NG8|1|AA|G|1746

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2

Chain Aa

Small subunit ribosomal RNA; SSU rRNA