IL_5NG8_093

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

5NG8|1|AA|G|2807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_093 not in the Motif Atlas

Geometric match to IL_4WF9_099

Geometric discrepancy: 0.0775

The information below is about IL_4WF9_099

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

5NG8|1|AA|U|2663
5NG8|1|AA|U|2664
5NG8|1|AA|G|2665
5NG8|1|AA|A|2666
5NG8|1|AA|G|2667
*
5NG8|1|AA|C|2801
5NG8|1|AA|A|2802
5NG8|1|AA|A|2803
5NG8|1|AA|G|2804
5NG8|1|AA|A|2805
5NG8|1|AA|U|2806
5NG8|1|AA|G|2807
5NG8|1|AA|A|2808
5NG8|1|AA|G|2809

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3

Chain AH

50S ribosomal protein L13