IL_5NG8_096

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UGUAC*GGUAG

Length

10 nucleotides

Bulged bases

5NG8|1|AA|U|2716, 5NG8|1|AA|A|2717

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_096 not in the Motif Atlas

Geometric match to IL_7RQB_105

Geometric discrepancy: 0.1288

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

5NG8|1|AA|U|2714
5NG8|1|AA|G|2715
5NG8|1|AA|U|2716
5NG8|1|AA|A|2717
5NG8|1|AA|C|2718
*
5NG8|1|AA|G|2745
5NG8|1|AA|G|2746
5NG8|1|AA|U|2747
5NG8|1|AA|A|2748
5NG8|1|AA|G|2749

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3

Chain AL

50S ribosomal protein L17

Chain AN

50S ribosomal protein L19