IL_5NG8_116

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5NG8|1|Aa|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_116 not in the Motif Atlas

Geometric match to IL_5J7L_012

Geometric discrepancy: 0.1335

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5NG8|1|Aa|G|147
5NG8|1|Aa|G|148
5NG8|1|Aa|A|149
5NG8|1|Aa|U|150
5NG8|1|Aa|A|151
5NG8|1|Aa|A|152
5NG8|1|Aa|C|153
*
5NG8|1|Aa|G|168
5NG8|1|Aa|C|169
5NG8|1|Aa|U|170
5NG8|1|Aa|A|171
5NG8|1|Aa|A|172
5NG8|1|Aa|U|173
5NG8|1|Aa|A|174
5NG8|1|Aa|C|175

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain At

30S ribosomal protein S20