IL_5NG8_126

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_126 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2196

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

5NG8|1|Aa|C|512
5NG8|1|Aa|G|513
5NG8|1|Aa|G|514
5NG8|1|Aa|C|515
5NG8|1|Aa|U|516
5NG8|1|Aa|A|517
5NG8|1|Aa|A|518
5NG8|1|Aa|C|519
*
5NG8|1|Aa|G|548
5NG8|1|Aa|G|549

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ad

30S ribosomal protein S4

Chain Al

30S ribosomal protein S12