IL_5NG8_134

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_134 not in the Motif Atlas

Geometric match to IL_4LFB_027

Geometric discrepancy: 0.0974

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

5NG8|1|Aa|G|662
5NG8|1|Aa|A|663
*
5NG8|1|Aa|U|759
5NG8|1|Aa|G|760
5NG8|1|Aa|A|761
5NG8|1|Aa|C|762

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ah

30S ribosomal protein S8

Chain Ao

30S ribosomal protein S15