IL_5NG8_136
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- GAAGAG*UGGUC
- Length
- 11 nucleotides
- Bulged bases
- 5NG8|1|Aa|A|673
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NG8_136 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.377
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
5NG8|1|Aa|G|669
5NG8|1|Aa|A|670
5NG8|1|Aa|A|671
5NG8|1|Aa|G|672
5NG8|1|Aa|A|673
5NG8|1|Aa|G|674
*
5NG8|1|Aa|U|748
5NG8|1|Aa|G|749
5NG8|1|Aa|G|750
5NG8|1|Aa|U|751
5NG8|1|Aa|C|752
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Af
- 30S ribosomal protein S6
- Chain Ao
- 30S ribosomal protein S15
- Chain Ar
- 30S ribosomal protein S18
- Chain Au
- 30S ribosomal protein S21
Coloring options: