IL_5NG8_168

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_168 not in the Motif Atlas

Geometric match to IL_4WF9_001

Geometric discrepancy: 0.0702

The information below is about IL_4WF9_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_22311.1

Basepair signature

cWW-cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

10

Unit IDs

5NG8|1|BA|G|24
5NG8|1|BA|U|25
5NG8|1|BA|G|26
5NG8|1|BA|G|27
5NG8|1|BA|A|28
5NG8|1|BA|U|29
5NG8|1|BA|G|30
*
5NG8|1|BA|C|555
5NG8|1|BA|U|556
5NG8|1|BA|G|557
5NG8|1|BA|A|558
5NG8|1|BA|A|559
5NG8|1|BA|A|560
5NG8|1|BA|C|561

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L20

Chain BQ

50S ribosomal protein L22

Chain BZ

50S ribosomal protein L32