IL_5NG8_175

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GAGAACUG*CUUAGUACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_175 not in the Motif Atlas

Geometric match to IL_4WF9_008

Geometric discrepancy: 0.0751

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_93502.1

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5NG8|1|BA|G|190
5NG8|1|BA|A|191
5NG8|1|BA|G|192
5NG8|1|BA|A|193
5NG8|1|BA|A|194
5NG8|1|BA|C|195
5NG8|1|BA|U|196
5NG8|1|BA|G|197
*
5NG8|1|BA|C|204
5NG8|1|BA|U|205
5NG8|1|BA|U|206
5NG8|1|BA|A|207
5NG8|1|BA|G|208
5NG8|1|BA|U|209
5NG8|1|BA|A|210
5NG8|1|BA|C|211
5NG8|1|BA|C|212

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BJ

50S ribosomal protein L15

Chain BV

50S ribosomal protein L28