IL_5NG8_181

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GCAC*GAGUGAAAUAGAAC

Length

18 nucleotides

Bulged bases

5NG8|1|BA|U|549, 5NG8|1|BA|A|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_181 not in the Motif Atlas

Geometric match to IL_4WF9_015

Geometric discrepancy: 0.1

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

5NG8|1|BA|G|527
5NG8|1|BA|C|528
5NG8|1|BA|A|529
5NG8|1|BA|C|530
*
5NG8|1|BA|G|541
5NG8|1|BA|A|542
5NG8|1|BA|G|543
5NG8|1|BA|U|544
5NG8|1|BA|G|545
5NG8|1|BA|A|546
5NG8|1|BA|A|547
5NG8|1|BA|A|548
5NG8|1|BA|U|549
5NG8|1|BA|A|550
5NG8|1|BA|G|551
5NG8|1|BA|A|552
5NG8|1|BA|A|553
5NG8|1|BA|C|554

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L22

Chain BS

50S ribosomal protein L24