IL_5NG8_207

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GCG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_207 not in the Motif Atlas

Geometric match to IL_4J50_003

Geometric discrepancy: 0.1929

The information below is about IL_4J50_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

5NG8|1|BA|G|1081
5NG8|1|BA|C|1082
5NG8|1|BA|G|1083
*
5NG8|1|BA|C|1160
5NG8|1|BA|A|1161
5NG8|1|BA|C|1162

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BK

50S ribosomal protein L16

Chain BT

50S ribosomal protein L25