IL_5NG8_214

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_214 not in the Motif Atlas

Geometric match to IL_5J7L_292

Geometric discrepancy: 0.087

The information below is about IL_5J7L_292

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5NG8|1|BA|C|1388
5NG8|1|BA|U|1389
5NG8|1|BA|A|1390
5NG8|1|BA|A|1391
5NG8|1|BA|G|1392
*
5NG8|1|BA|C|1413
5NG8|1|BA|G|1414
5NG8|1|BA|A|1415
5NG8|1|BA|U|1416
5NG8|1|BA|G|1417

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2