IL_5NG8_228

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

5NG8|1|BA|G|2019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_228 not in the Motif Atlas

Geometric match to IL_4WF9_065

Geometric discrepancy: 0.0989

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

5NG8|1|BA|A|1713
5NG8|1|BA|C|1714
5NG8|1|BA|U|1715
5NG8|1|BA|C|1716
5NG8|1|BA|G|1717
5NG8|1|BA|G|1718
*
5NG8|1|BA|C|2017
5NG8|1|BA|U|2018
5NG8|1|BA|G|2019
5NG8|1|BA|U|2020

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BI

50S ribosomal protein L14