IL_5NG8_261

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_261 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.1091

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5NG8|1|BA|U|2679
5NG8|1|BA|U|2680
5NG8|1|BA|A|2681
5NG8|1|BA|G|2682
5NG8|1|BA|U|2683
5NG8|1|BA|A|2684
5NG8|1|BA|C|2685
*
5NG8|1|BA|G|2690
5NG8|1|BA|G|2691
5NG8|1|BA|A|2692
5NG8|1|BA|C|2693
5NG8|1|BA|C|2694
5NG8|1|BA|G|2695

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BG

50S ribosomal protein L6