IL_5NG8_273
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- CGAUGGUAG*CUAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NG8_273 not in the Motif Atlas
- Geometric match to IL_5J7L_359
- Geometric discrepancy: 0.1054
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
5NG8|1|BB|C|69
5NG8|1|BB|G|70
5NG8|1|BB|A|71
5NG8|1|BB|U|72
5NG8|1|BB|G|73
5NG8|1|BB|G|74
5NG8|1|BB|U|75
5NG8|1|BB|A|76
5NG8|1|BB|G|77
*
5NG8|1|BB|C|94
5NG8|1|BB|U|95
5NG8|1|BB|A|96
5NG8|1|BB|G|97
5NG8|1|BB|A|98
5NG8|1|BB|G|99
5NG8|1|BB|U|100
5NG8|1|BB|A|101
5NG8|1|BB|G|102
Current chains
- Chain BB
- 5S ribosomal RNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BK
- 50S ribosomal protein L16
- Chain BT
- 50S ribosomal protein L25
- Chain BU
- 50S ribosomal protein L27
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