IL_5NG8_281

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UAAC*GA

Length

6 nucleotides

Bulged bases

5NG8|1|Ba|A|129

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_281 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.1895

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

5NG8|1|Ba|U|128
5NG8|1|Ba|A|129
5NG8|1|Ba|A|130
5NG8|1|Ba|C|131
*
5NG8|1|Ba|G|239
5NG8|1|Ba|A|240

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bp

30S ribosomal protein S16

Chain Bq

30S ribosomal protein S17

Chain Bt

30S ribosomal protein S20