IL_5NG8_289

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_289 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.093

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

5NG8|1|Ba|G|379
5NG8|1|Ba|C|380
5NG8|1|Ba|A|381
5NG8|1|Ba|A|382
5NG8|1|Ba|U|383
*
5NG8|1|Ba|A|397
5NG8|1|Ba|C|398

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bp

30S ribosomal protein S16