IL_5NG8_311

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

5NG8|1|Ba|C|943

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_311 not in the Motif Atlas

Geometric match to IL_5J7L_041

Geometric discrepancy: 0.1765

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5NG8|1|Ba|G|942
5NG8|1|Ba|C|943
5NG8|1|Ba|A|944
*
5NG8|1|Ba|U|1390
5NG8|1|Ba|U|1391
5NG8|1|Ba|C|1392
5NG8|1|Ba|C|1393
5NG8|1|Ba|C|1394

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bg

30S ribosomal protein S7

Chain Bi

30S ribosomal protein S9

Chain Bv

Ribosome hibernation promotion factor