IL_5NG8_312

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_312 not in the Motif Atlas

Geometric match to IL_7RQB_081

Geometric discrepancy: 0.2211

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

5NG8|1|Ba|G|962
5NG8|1|Ba|G|963
*
5NG8|1|Ba|C|1236
5NG8|1|Ba|A|1237
5NG8|1|Ba|C|1238

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bm

30S ribosomal protein S13

Chain Bs

30S ribosomal protein S19

Chain Bv

Ribosome hibernation promotion factor