IL_5NG8_320
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- UACAAAG*CAUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 5NG8|1|Ba|U|1296
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NG8_320 not in the Motif Atlas
- Geometric match to IL_5J7L_054
- Geometric discrepancy: 0.1876
- The information below is about IL_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NG8|1|Ba|U|1257
5NG8|1|Ba|A|1258
5NG8|1|Ba|C|1259
5NG8|1|Ba|A|1260
5NG8|1|Ba|A|1261
5NG8|1|Ba|A|1262
5NG8|1|Ba|G|1263
*
5NG8|1|Ba|C|1294
5NG8|1|Ba|A|1295
5NG8|1|Ba|U|1296
5NG8|1|Ba|A|1297
5NG8|1|Ba|A|1298
5NG8|1|Ba|A|1299
5NG8|1|Ba|G|1300
Current chains
- Chain Ba
- 16S ribosomal RNA
Nearby chains
- Chain Bg
- 30S ribosomal protein S7
- Chain Bi
- 30S ribosomal protein S9
- Chain Bj
- 30S ribosomal protein S10
- Chain Bn
- 30S ribosomal protein S14 type Z
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