IL_5NG8_322

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGAAAC*GUCAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_322 not in the Motif Atlas

Geometric match to IL_1L9A_008

Geometric discrepancy: 0.3341

The information below is about IL_1L9A_008

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_71294.3

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

5NG8|1|Ba|C|1269
5NG8|1|Ba|G|1270
5NG8|1|Ba|A|1271
5NG8|1|Ba|A|1272
5NG8|1|Ba|A|1273
5NG8|1|Ba|C|1274
*
5NG8|1|Ba|G|1281
5NG8|1|Ba|U|1282
5NG8|1|Ba|C|1283
5NG8|1|Ba|A|1284
5NG8|1|Ba|A|1285
5NG8|1|Ba|G|1286

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bs

30S ribosomal protein S19